Long insert query

I want to insert about 12500 lines into my database for a map for a game server. this is my script generates the query

sql = "INSERT INTO `legends`.`map` (`x`, `y`, `land`, `collision`, `impedance`, `effect`) VALUES "
for (y=0;y<ig.game.collisionMap.data.length;y++){
   for (x=0;x<ig.game.collisionMap.data[y].length;x++){
      if (x==0&&y==0){
         comma=""
      }else{
         comma=","
      }
      sql=sql+comma+"("+x*55+","+y*55+",'kesmai',"+ig.game.collisionMap.data[y][x]+","+ig.game.backgroundMaps[0].data[y][x]+", '0')";
   }
}
console.log(sql)

The output is y=86 x=145 My client side script has access to the data for the maps so I was just pasting the output to phpMyAdmin to run the query. The problem I hit (which I expected) was my php script can only run 30 seconds this is my error.

Fatal error: Maximum execution time of 30 seconds exceeded in C:\wamp\apps\phpmyadmin3.4.10.1\libraries\session.inc.php on line 92

I am running a WAMP server and I tried to edit my php.ini file here

; Maximum execution time of each script, in seconds
; http://php.net/max-execution-time
; Note: This directive is hardcoded to 0 for the CLI SAPI
max_execution_time = 0

; Maximum amount of time each script may spend parsing request data. It's a good
; idea to limit this time on productions servers in order to eliminate unexpectedly
; long running scripts. 
; Note: This directive is hardcoded to -1 for the CLI SAPI
; Default Value: -1 (Unlimited)
; Development Value: 60 (60 seconds)
; Production Value: 60 (60 seconds)
; http://php.net/max-input-time
max_input_time = -1

no luck so far... Any suggestions on how to run a long query such as this>?

I was considering temporarily putting it in my server script which runs in node.js